.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/plot_timeseries.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_plot_timeseries.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_plot_timeseries.py:


==============================================
Extract and Plot cGENIE Time Series data
==============================================

This example shows how to read in and plot cGENIE time series data.

.. GENERATED FROM PYTHON SOURCE LINES 8-24



.. image-sg:: /auto_examples/images/sphx_glr_plot_timeseries_001.png
   :alt: plot timeseries
   :srcset: /auto_examples/images/sphx_glr_plot_timeseries_001.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    /home/docs/checkouts/readthedocs.org/user_builds/cgeniepy/envs/stable/lib/python3.12/site-packages/cgeniepy/model.py:58: UserWarning: No gemflag is provided, use default gemflags: [biogem]
      warnings.warn("No gemflag is provided, use default gemflags: [biogem]")

    [<matplotlib.lines.Line2D object at 0x7d6f3251af00>]





|

.. code-block:: Python

    import cgeniepy
    import matplotlib.pyplot as plt
    from cgeniepy.table import ScatterData


    ## read in the model
    model = cgeniepy.sample_model()
    temp = model.get_ts("ocn_temp")
    o2 = model.get_ts("ocn_O2")

    ## merge both and convert to ScatterData format
    ts_data = ScatterData(temp.merge(o2, on="time (yr)"))
    ts_data.set_index("time (yr)")
    fig, axs = plt.subplots(2, 1)
    ts_data.plot(var="temperature (C)", ax=axs[0], kind='line')
    ts_data.plot(var="surface O2 (mol kg-1)", ax=axs[1], kind='line')


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.120 seconds)


.. _sphx_glr_download_auto_examples_plot_timeseries.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_timeseries.ipynb <plot_timeseries.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_timeseries.py <plot_timeseries.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_timeseries.zip <plot_timeseries.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_